Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC18.29■□□□□ 0.52
Limch1Q3UH68 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC18.28■□□□□ 0.52
Limch1Q3UH68 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.28■□□□□ 0.52
Limch1Q3UH68 AC127349.1-201ENSMUST00000224590 266 ntBASIC18.28■□□□□ 0.52
Limch1Q3UH68 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC18.28■□□□□ 0.52
Limch1Q3UH68 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Limch1Q3UH68 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC18.27■□□□□ 0.52
Limch1Q3UH68 Gm43073-201ENSMUST00000198200 1189 ntBASIC18.27■□□□□ 0.52
Limch1Q3UH68 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
Limch1Q3UH68 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Limch1Q3UH68 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Limch1Q3UH68 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Limch1Q3UH68 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Limch1Q3UH68 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.27■□□□□ 0.51
Limch1Q3UH68 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Limch1Q3UH68 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Gm12350-201ENSMUST00000121208 462 ntBASIC18.26■□□□□ 0.51
Limch1Q3UH68 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.26■□□□□ 0.51
Limch1Q3UH68 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Limch1Q3UH68 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Limch1Q3UH68 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms