Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 AC160980.1-201ENSMUST00000224136 970 ntBASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddb1Q3U1J4 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Prkcz2-201ENSMUST00000206136 1756 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Gm15487-201ENSMUST00000122373 465 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Gm28630-201ENSMUST00000187806 498 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Gm9063-201ENSMUST00000223299 582 ntBASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddb1Q3U1J4 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Gm13015-201ENSMUST00000118674 204 ntBASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Gm18049-201ENSMUST00000208909 581 ntBASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddb1Q3U1J4 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gm12490-201ENSMUST00000120255 560 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gm14767-201ENSMUST00000121559 586 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gm18187-201ENSMUST00000196476 984 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 AC124732.1-201ENSMUST00000221551 910 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 AC132863.2-201ENSMUST00000226643 799 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 AC132467.2-202ENSMUST00000227726 559 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gm42934-201ENSMUST00000196920 1345 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Syt7-204ENSMUST00000223586 1344 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Gm13337-201ENSMUST00000119183 1594 ntBASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Ddb1Q3U1J4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddb1Q3U1J4 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddb1Q3U1J4 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddb1Q3U1J4 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Gm8116-201ENSMUST00000182917 1201 ntBASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddb1Q3U1J4 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms