Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Ptchd3Q0EEE2 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ptchd3Q0EEE2 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.08■□□□□ 0.01
Ptchd3Q0EEE2 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ptchd3Q0EEE2 Gm15442-201ENSMUST00000117905 1527 ntBASIC15.08■□□□□ 0.01
Ptchd3Q0EEE2 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ptchd3Q0EEE2 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Gm11355-201ENSMUST00000121120 306 ntBASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Gm29707-201ENSMUST00000196325 491 ntBASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ptchd3Q0EEE2 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ptchd3Q0EEE2 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Ptchd3Q0EEE2 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC15.05■□□□□ -0
Ptchd3Q0EEE2 Gm13836-201ENSMUST00000121159 501 ntBASIC15.05■□□□□ -0
Ptchd3Q0EEE2 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ptchd3Q0EEE2 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Ptchd3Q0EEE2 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ptchd3Q0EEE2 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms