Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.43■□□□□ 0.22
Shmt1P50431 Gm4899-201ENSMUST00000178708 719 ntBASIC16.43■□□□□ 0.22
Shmt1P50431 Gm37935-201ENSMUST00000192012 982 ntBASIC16.43■□□□□ 0.22
Shmt1P50431 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC16.43■□□□□ 0.22
Shmt1P50431 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Psmb5-202ENSMUST00000227257 622 ntBASIC16.43■□□□□ 0.22
Shmt1P50431 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC16.43■□□□□ 0.22
Shmt1P50431 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC16.43■□□□□ 0.22
Shmt1P50431 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Shmt1P50431 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Shmt1P50431 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Shmt1P50431 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Shmt1P50431 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.42■□□□□ 0.22
Shmt1P50431 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Shmt1P50431 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.42■□□□□ 0.22
Shmt1P50431 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
Shmt1P50431 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 AC122901.1-201ENSMUST00000214203 1790 ntBASIC16.42■□□□□ 0.22
Shmt1P50431 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Shmt1P50431 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.42■□□□□ 0.22
Shmt1P50431 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.42■□□□□ 0.22
Shmt1P50431 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC16.42■□□□□ 0.22
Shmt1P50431 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.42■□□□□ 0.22
Shmt1P50431 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shmt1P50431 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.41■□□□□ 0.22
Shmt1P50431 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Shmt1P50431 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.41■□□□□ 0.22
Shmt1P50431 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.41■□□□□ 0.22
Shmt1P50431 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.41■□□□□ 0.22
Shmt1P50431 Gm8000-201ENSMUST00000188378 592 ntBASIC16.41■□□□□ 0.22
Shmt1P50431 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Shmt1P50431 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shmt1P50431 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Shmt1P50431 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Shmt1P50431 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Shmt1P50431 Gm11594-201ENSMUST00000122313 162 ntBASIC16.4■□□□□ 0.22
Shmt1P50431 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Gm9682-201ENSMUST00000197505 556 ntBASIC16.4■□□□□ 0.22
Shmt1P50431 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.4■□□□□ 0.22
Shmt1P50431 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC16.4■□□□□ 0.22
Shmt1P50431 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC16.4■□□□□ 0.22
Shmt1P50431 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.4■□□□□ 0.22
Shmt1P50431 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Shmt1P50431 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shmt1P50431 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms