Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Lmx1bO88609 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.09□□□□□ -0.15
Lmx1bO88609 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Lmx1bO88609 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 AC159093.1-201ENSMUST00000227779 380 ntBASIC14.09□□□□□ -0.15
Lmx1bO88609 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Lmx1bO88609 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lmx1bO88609 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lmx1bO88609 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
Lmx1bO88609 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lmx1bO88609 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.15
Lmx1bO88609 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lmx1bO88609 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Lmx1bO88609 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Grk6-207ENSMUST00000225925 2769 ntBASIC14.08□□□□□ -0.16
Lmx1bO88609 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Gm12260-201ENSMUST00000122447 411 ntBASIC14.08□□□□□ -0.16
Lmx1bO88609 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Gm42670-201ENSMUST00000201816 1292 ntBASIC14.08□□□□□ -0.16
Lmx1bO88609 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Lmx1bO88609 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Lmx1bO88609 App-207ENSMUST00000227737 2827 ntBASIC14.08□□□□□ -0.16
Lmx1bO88609 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lmx1bO88609 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
Lmx1bO88609 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.07□□□□□ -0.16
Lmx1bO88609 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Lmx1bO88609 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.07□□□□□ -0.16
Lmx1bO88609 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Gm5264-201ENSMUST00000190584 848 ntBASIC14.07□□□□□ -0.16
Lmx1bO88609 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.07□□□□□ -0.16
Lmx1bO88609 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.07□□□□□ -0.16
Lmx1bO88609 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lmx1bO88609 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms