Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Clk3O35492 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.85□□□□□ -0.03
Clk3O35492 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Gm27704-201ENSMUST00000185094 107 ntBASIC14.85□□□□□ -0.03
Clk3O35492 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC14.85□□□□□ -0.03
Clk3O35492 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Clk3O35492 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
Clk3O35492 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Clk3O35492 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Clk3O35492 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Clk3O35492 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Clk3O35492 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.84□□□□□ -0.03
Clk3O35492 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC14.84□□□□□ -0.03
Clk3O35492 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Clk3O35492 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Clk3O35492 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.83□□□□□ -0.03
Clk3O35492 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Clk3O35492 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Clk3O35492 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Clk3O35492 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Clk3O35492 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Clk3O35492 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Clk3O35492 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Clk3O35492 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Clk3O35492 Gm7284-201ENSMUST00000131667 944 ntBASIC14.83□□□□□ -0.04
Clk3O35492 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.83□□□□□ -0.04
Clk3O35492 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
Clk3O35492 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
Clk3O35492 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clk3O35492 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.82□□□□□ -0.04
Clk3O35492 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Clk3O35492 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.82□□□□□ -0.04
Clk3O35492 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Clk3O35492 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clk3O35492 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms