Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ldb3Q9JKS4 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Gm15358-201ENSMUST00000119249 520 ntBASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Mir8098-201ENSMUST00000184011 137 ntBASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Gm6376-201ENSMUST00000209407 580 ntBASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ldb3Q9JKS4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 AC159106.1-201ENSMUST00000224421 690 ntBASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ldb3Q9JKS4 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Gm13884-201ENSMUST00000118103 829 ntBASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Gm11452-201ENSMUST00000122376 690 ntBASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ldb3Q9JKS4 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms