Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Gm14822-201ENSMUST00000122247 291 ntBASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 AC154572.2-201ENSMUST00000225105 997 ntBASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Ddx58Q6Q899 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Gm4913-201ENSMUST00000117075 1290 ntBASIC19.25■□□□□ 0.67
Ddx58Q6Q899 H2af-ps-201ENSMUST00000119066 295 ntBASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Gm5184-201ENSMUST00000220417 1702 ntBASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ddx58Q6Q899 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ddx58Q6Q899 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Mir7036b-201ENSMUST00000184791 63 ntBASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Gm17968-201ENSMUST00000194902 784 ntBASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Gm18246-201ENSMUST00000221023 728 ntBASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Gm42473-201ENSMUST00000201056 2291 ntBASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ddx58Q6Q899 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Gm23935-201ENSMUST00000102303 57 ntBASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Gm24270-201ENSMUST00000102326 57 ntBASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Gm24245-201ENSMUST00000157318 57 ntBASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC19.22■□□□□ 0.67
Ddx58Q6Q899 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms