Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Gm3928-201ENSMUST00000121141 1307 ntBASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.34■□□□□ 0.21
Hmgb4Q6P8W9 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Hmgb4Q6P8W9 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb4Q6P8W9 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Hmgb4Q6P8W9 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb4Q6P8W9 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb4Q6P8W9 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Gm14140-201ENSMUST00000119999 995 ntBASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb4Q6P8W9 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Mir6404-201ENSMUST00000183699 94 ntBASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb4Q6P8W9 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Gm18622-201ENSMUST00000219361 595 ntBASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb4Q6P8W9 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 Gm27702-201ENSMUST00000184512 56 ntBASIC16.3■□□□□ 0.2
Hmgb4Q6P8W9 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms