Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.38□□□□□ -0.11
Cd40lgP27548 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.38□□□□□ -0.11
Cd40lgP27548 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 Gm25745-201ENSMUST00000174945 133 ntBASIC14.38□□□□□ -0.11
Cd40lgP27548 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Cd40lgP27548 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 AC132265.1-201ENSMUST00000219233 1665 ntBASIC14.38□□□□□ -0.11
Cd40lgP27548 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.38□□□□□ -0.11
Cd40lgP27548 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cd40lgP27548 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Cd40lgP27548 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Cd40lgP27548 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Gm6858-201ENSMUST00000208582 1468 ntBASIC14.37□□□□□ -0.11
Cd40lgP27548 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cd40lgP27548 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.36□□□□□ -0.11
Cd40lgP27548 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Cd40lgP27548 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Mir8098-201ENSMUST00000184011 137 ntBASIC14.36□□□□□ -0.11
Cd40lgP27548 Gm27459-201ENSMUST00000184860 107 ntBASIC14.36□□□□□ -0.11
Cd40lgP27548 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.36□□□□□ -0.11
Cd40lgP27548 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.36□□□□□ -0.11
Cd40lgP27548 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.36□□□□□ -0.11
Cd40lgP27548 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC14.36□□□□□ -0.11
Cd40lgP27548 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cd40lgP27548 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.35□□□□□ -0.11
Cd40lgP27548 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Gm9172-201ENSMUST00000212092 954 ntBASIC14.35□□□□□ -0.11
Cd40lgP27548 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Cd40lgP27548 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cd40lgP27548 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms