Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm27628-201ENSMUST00000184911 107 ntBASIC14.13□□□□□ -0.15
Lmx1bO88609 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.13□□□□□ -0.15
Lmx1bO88609 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Lmx1bO88609 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Lmx1bO88609 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC14.13□□□□□ -0.15
Lmx1bO88609 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Lmx1bO88609 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Lmx1bO88609 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm13036-201ENSMUST00000117799 748 ntBASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm6184-201ENSMUST00000120403 1261 ntBASIC14.12□□□□□ -0.15
Lmx1bO88609 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.12□□□□□ -0.15
Lmx1bO88609 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC14.12□□□□□ -0.15
Lmx1bO88609 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.12□□□□□ -0.15
Lmx1bO88609 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Lmx1bO88609 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Ntrk2-205ENSMUST00000224402 2284 ntBASIC14.12□□□□□ -0.15
Lmx1bO88609 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Lmx1bO88609 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lmx1bO88609 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Gm7222-201ENSMUST00000117512 906 ntBASIC14.11□□□□□ -0.15
Lmx1bO88609 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.11□□□□□ -0.15
Lmx1bO88609 Gm27646-201ENSMUST00000183989 110 ntBASIC14.11□□□□□ -0.15
Lmx1bO88609 Gm8000-201ENSMUST00000188378 592 ntBASIC14.11□□□□□ -0.15
Lmx1bO88609 Gm8784-201ENSMUST00000222096 1435 ntBASIC14.11□□□□□ -0.15
Lmx1bO88609 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Psmb5-202ENSMUST00000227257 622 ntBASIC14.11□□□□□ -0.15
Lmx1bO88609 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Lmx1bO88609 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Lmx1bO88609 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Lmx1bO88609 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.11□□□□□ -0.15
Lmx1bO88609 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Lmx1bO88609 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Lmx1bO88609 Gm11779-201ENSMUST00000118541 368 ntBASIC14.1□□□□□ -0.15
Lmx1bO88609 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 AC153526.5-201ENSMUST00000218661 2147 ntBASIC14.1□□□□□ -0.15
Lmx1bO88609 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.1□□□□□ -0.15
Lmx1bO88609 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms