Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC18.36■□□□□ 0.53
Scn11aQ9R053 CT030684.1-201ENSMUST00000227292 914 ntBASIC18.36■□□□□ 0.53
Scn11aQ9R053 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Scn11aQ9R053 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC18.35■□□□□ 0.53
Scn11aQ9R053 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.35■□□□□ 0.53
Scn11aQ9R053 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Scn11aQ9R053 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.34■□□□□ 0.53
Scn11aQ9R053 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Scn11aQ9R053 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm22065-201ENSMUST00000103753 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm22066-201ENSMUST00000103761 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24932-201ENSMUST00000103763 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24115-201ENSMUST00000103799 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm22190-201ENSMUST00000103827 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm22191-201ENSMUST00000103831 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24721-201ENSMUST00000103849 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm28018-201ENSMUST00000103869 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm26399-201ENSMUST00000103937 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC18.33■□□□□ 0.53
Scn11aQ9R053 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC18.33■□□□□ 0.53
Scn11aQ9R053 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC18.33■□□□□ 0.53
Scn11aQ9R053 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm25349-201ENSMUST00000177728 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm23616-201ENSMUST00000177797 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm25871-201ENSMUST00000177816 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24752-201ENSMUST00000178240 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24496-201ENSMUST00000178287 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm25649-201ENSMUST00000178476 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm25548-201ENSMUST00000178681 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm23147-201ENSMUST00000178841 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm26095-201ENSMUST00000179270 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm22171-201ENSMUST00000179283 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm23936-201ENSMUST00000179354 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm22619-201ENSMUST00000179516 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm25255-201ENSMUST00000179579 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24755-201ENSMUST00000179691 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm26506-201ENSMUST00000179692 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm25086-201ENSMUST00000179931 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm23243-201ENSMUST00000180047 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24659-201ENSMUST00000180212 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm24169-201ENSMUST00000180244 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm23689-201ENSMUST00000180354 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 H2-Pa-201ENSMUST00000182803 626 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm27359-201ENSMUST00000184153 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm27785-201ENSMUST00000184268 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm27466-201ENSMUST00000184396 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm27703-201ENSMUST00000184836 110 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Gm2272-201ENSMUST00000194903 582 ntBASIC18.33■□□□□ 0.53
Scn11aQ9R053 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms