Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC21.39■■□□□ 1.01
Cpsf1Q9EPU4 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Mir7036b-201ENSMUST00000184791 63 ntBASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Gm2272-201ENSMUST00000194903 582 ntBASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Cpsf1Q9EPU4 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 AC133083.1-201ENSMUST00000221736 2209 ntBASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC21.37■■□□□ 1.01
Cpsf1Q9EPU4 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Gm5049-201ENSMUST00000195878 1590 ntBASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Rpph1-201ENSMUST00000175096 319 ntBASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Gm27301-201ENSMUST00000184012 127 ntBASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Gm27494-201ENSMUST00000184735 189 ntBASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Cpsf1Q9EPU4 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cpsf1Q9EPU4 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Cpsf1Q9EPU4 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms