Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Gm18622-201ENSMUST00000219361 595 ntBASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ddx56Q9D0R4 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Gm28033-201ENSMUST00000184224 96 ntBASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Gm8655-201ENSMUST00000221159 852 ntBASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Ddx56Q9D0R4 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Gm5837-201ENSMUST00000191844 1369 ntBASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Ddx56Q9D0R4 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Asic1-205ENSMUST00000228185 1818 ntBASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Ddx56Q9D0R4 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms