Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Msh4Q99MT2 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Gm42901-201ENSMUST00000197735 3171 ntBASIC15.24■□□□□ 0.03
Msh4Q99MT2 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Gm15165-201ENSMUST00000118140 502 ntBASIC15.24■□□□□ 0.03
Msh4Q99MT2 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Msh4Q99MT2 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Gm12644-201ENSMUST00000119935 606 ntBASIC15.23■□□□□ 0.03
Msh4Q99MT2 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Gm27867-201ENSMUST00000184778 125 ntBASIC15.23■□□□□ 0.03
Msh4Q99MT2 Gm27459-201ENSMUST00000184860 107 ntBASIC15.23■□□□□ 0.03
Msh4Q99MT2 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Gm43347-201ENSMUST00000200226 580 ntBASIC15.23■□□□□ 0.03
Msh4Q99MT2 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Msh4Q99MT2 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Cmtm5-203ENSMUST00000227441 610 ntBASIC15.22■□□□□ 0.03
Msh4Q99MT2 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Msh4Q99MT2 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms