Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Mir3081-201ENSMUST00000175305 84 ntBASIC17.76■□□□□ 0.43
Usp28Q5I043 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.76■□□□□ 0.43
Usp28Q5I043 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Usp28Q5I043 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Usp28Q5I043 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.75■□□□□ 0.43
Usp28Q5I043 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Usp28Q5I043 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC17.75■□□□□ 0.43
Usp28Q5I043 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Usp28Q5I043 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.74■□□□□ 0.43
Usp28Q5I043 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Usp28Q5I043 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Usp28Q5I043 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.74■□□□□ 0.43
Usp28Q5I043 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.74■□□□□ 0.43
Usp28Q5I043 Gm13034-201ENSMUST00000121342 3177 ntBASIC17.74■□□□□ 0.43
Usp28Q5I043 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Usp28Q5I043 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Usp28Q5I043 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.73■□□□□ 0.43
Usp28Q5I043 AC127349.1-201ENSMUST00000224590 266 ntBASIC17.73■□□□□ 0.43
Usp28Q5I043 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.73■□□□□ 0.43
Usp28Q5I043 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Usp28Q5I043 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms