Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ccdc88bQ4QRL3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Gm2272-201ENSMUST00000194903 582 ntBASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 AC131187.1-201ENSMUST00000224567 809 ntBASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 CT009510.1-201ENSMUST00000227972 270 ntBASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ccdc88bQ4QRL3 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 AC126250.1-201ENSMUST00000228343 1768 ntBASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC25.23■■□□□ 1.63
Ccdc88bQ4QRL3 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm22065-201ENSMUST00000103753 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm22066-201ENSMUST00000103761 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24932-201ENSMUST00000103763 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24115-201ENSMUST00000103799 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm22190-201ENSMUST00000103827 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm22191-201ENSMUST00000103831 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24721-201ENSMUST00000103849 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm28018-201ENSMUST00000103869 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm26399-201ENSMUST00000103937 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm25349-201ENSMUST00000177728 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm23616-201ENSMUST00000177797 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm25871-201ENSMUST00000177816 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24752-201ENSMUST00000178240 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24496-201ENSMUST00000178287 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm25649-201ENSMUST00000178476 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm25548-201ENSMUST00000178681 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm23147-201ENSMUST00000178841 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm26095-201ENSMUST00000179270 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm22171-201ENSMUST00000179283 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm23936-201ENSMUST00000179354 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm22619-201ENSMUST00000179516 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm25255-201ENSMUST00000179579 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24755-201ENSMUST00000179691 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm26506-201ENSMUST00000179692 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm25086-201ENSMUST00000179931 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm23243-201ENSMUST00000180047 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24659-201ENSMUST00000180212 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm24169-201ENSMUST00000180244 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm23689-201ENSMUST00000180354 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm27359-201ENSMUST00000184153 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm27785-201ENSMUST00000184268 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm27466-201ENSMUST00000184396 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm27703-201ENSMUST00000184836 110 ntBASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ccdc88bQ4QRL3 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ccdc88bQ4QRL3 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Ccdc88bQ4QRL3 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC25.2■■□□□ 1.63
Ccdc88bQ4QRL3 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.63
Ccdc88bQ4QRL3 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Ccdc88bQ4QRL3 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Ccdc88bQ4QRL3 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ccdc88bQ4QRL3 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms