Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.06■□□□□ 0.32
Lig3P97386 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lig3P97386 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Lig3P97386 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Gm4995-201ENSMUST00000117247 432 ntBASIC17.05■□□□□ 0.32
Lig3P97386 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Lig3P97386 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Lig3P97386 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.05■□□□□ 0.32
Lig3P97386 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Lig3P97386 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Lig3P97386 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Lig3P97386 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Lig3P97386 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
Lig3P97386 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC17.04■□□□□ 0.32
Lig3P97386 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC17.04■□□□□ 0.32
Lig3P97386 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.04■□□□□ 0.32
Lig3P97386 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.04■□□□□ 0.32
Lig3P97386 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.04■□□□□ 0.32
Lig3P97386 Gm7230-201ENSMUST00000173026 815 ntBASIC17.04■□□□□ 0.32
Lig3P97386 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.04■□□□□ 0.32
Lig3P97386 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.04■□□□□ 0.32
Lig3P97386 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Lig3P97386 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Lig3P97386 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Lig3P97386 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Lig3P97386 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Lig3P97386 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Lig3P97386 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Lig3P97386 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Lig3P97386 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.03■□□□□ 0.32
Lig3P97386 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Lig3P97386 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Lig3P97386 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.03■□□□□ 0.32
Lig3P97386 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Lig3P97386 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Lig3P97386 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
Lig3P97386 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 Gm25990-201ENSMUST00000102440 86 ntBASIC17.02■□□□□ 0.32
Lig3P97386 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.02■□□□□ 0.32
Lig3P97386 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.02■□□□□ 0.32
Lig3P97386 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.02■□□□□ 0.32
Lig3P97386 Gm44450-201ENSMUST00000199528 114 ntBASIC17.02■□□□□ 0.32
Lig3P97386 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC17.02■□□□□ 0.32
Lig3P97386 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lig3P97386 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.02■□□□□ 0.32
Lig3P97386 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms