Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Cux1P53564 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
Cux1P53564 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Cux1P53564 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Cux1P53564 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC23.83■■□□□ 1.41
Cux1P53564 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC23.83■■□□□ 1.41
Cux1P53564 Wdyhv1-203ENSMUST00000226889 394 ntBASIC23.83■■□□□ 1.41
Cux1P53564 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Cux1P53564 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC23.83■■□□□ 1.4
Cux1P53564 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC23.82■■□□□ 1.4
Cux1P53564 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC23.82■■□□□ 1.4
Cux1P53564 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC23.82■■□□□ 1.4
Cux1P53564 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
Cux1P53564 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC23.82■■□□□ 1.4
Cux1P53564 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Cux1P53564 Ntrk2-205ENSMUST00000224402 2284 ntBASIC23.82■■□□□ 1.4
Cux1P53564 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC23.81■■□□□ 1.4
Cux1P53564 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Cux1P53564 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC23.81■■□□□ 1.4
Cux1P53564 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC23.81■■□□□ 1.4
Cux1P53564 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Cux1P53564 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC23.81■■□□□ 1.4
Cux1P53564 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cux1P53564 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC23.8■■□□□ 1.4
Cux1P53564 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC23.8■■□□□ 1.4
Cux1P53564 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC23.8■■□□□ 1.4
Cux1P53564 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC23.8■■□□□ 1.4
Cux1P53564 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Cux1P53564 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Gm27437-201ENSMUST00000183429 107 ntBASIC23.79■■□□□ 1.4
Cux1P53564 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Cux1P53564 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC23.79■■□□□ 1.4
Cux1P53564 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 AC159621.2-201ENSMUST00000223519 1326 ntBASIC23.79■■□□□ 1.4
Cux1P53564 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Cux1P53564 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC23.79■■□□□ 1.4
Cux1P53564 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Gm43072-201ENSMUST00000200283 1671 ntBASIC23.78■■□□□ 1.4
Cux1P53564 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC23.78■■□□□ 1.4
Cux1P53564 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
Cux1P53564 Gm28630-201ENSMUST00000187806 498 ntBASIC23.78■■□□□ 1.4
Cux1P53564 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC23.78■■□□□ 1.4
Cux1P53564 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC23.78■■□□□ 1.4
Cux1P53564 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Cux1P53564 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Cux1P53564 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
Cux1P53564 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
Cux1P53564 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
Cux1P53564 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Cux1P53564 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC23.77■■□□□ 1.4
Cux1P53564 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Cux1P53564 Gm2423-201ENSMUST00000074863 733 ntBASIC23.77■■□□□ 1.4
Cux1P53564 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cux1P53564 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms