Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdhgb8A0A140LI48 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Pcdhgb8A0A140LI48 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Mir770-201ENSMUST00000103252 94 ntBASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 AC159205.3-201ENSMUST00000224614 874 ntBASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm6190-201ENSMUST00000220683 1374 ntBASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 App-207ENSMUST00000227737 2827 ntBASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Pcdhgb8A0A140LI48 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 AL590614.2-201ENSMUST00000225374 1937 ntBASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Pcdhgb8A0A140LI48 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm11336-201ENSMUST00000118168 334 ntBASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Pcdhgb8A0A140LI48 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms