Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ube3bQ9ES34 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Gm38318-201ENSMUST00000195769 1706 ntBASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ube3bQ9ES34 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Gm8318-201ENSMUST00000182954 872 ntBASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ube3bQ9ES34 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Gm8000-201ENSMUST00000188378 592 ntBASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ube3bQ9ES34 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Gm15467-201ENSMUST00000120582 445 ntBASIC18.56■□□□□ 0.56
Ube3bQ9ES34 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.56■□□□□ 0.56
Ube3bQ9ES34 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Ube3bQ9ES34 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Gm12260-201ENSMUST00000122447 411 ntBASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Gm5264-201ENSMUST00000190584 848 ntBASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ube3bQ9ES34 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms