Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Gm7935-201ENSMUST00000100555 1278 ntBASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Gm7506-201ENSMUST00000207758 815 ntBASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Ddx56Q9D0R4 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Gm4459-201ENSMUST00000118750 468 ntBASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Ddx56Q9D0R4 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Gm12644-201ENSMUST00000119935 606 ntBASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Ddx56Q9D0R4 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ddx56Q9D0R4 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ddx56Q9D0R4 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Ddx56Q9D0R4 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ddx56Q9D0R4 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.44■□□□□ 0.22
Ddx56Q9D0R4 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms