Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Gm12644-201ENSMUST00000119935 606 ntBASIC14.81□□□□□ -0.04
Clrn1Q8K445 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.81□□□□□ -0.04
Clrn1Q8K445 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.81□□□□□ -0.04
Clrn1Q8K445 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Gm10819-201ENSMUST00000099988 561 ntBASIC14.81□□□□□ -0.04
Clrn1Q8K445 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clrn1Q8K445 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.81□□□□□ -0.04
Clrn1Q8K445 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 App-207ENSMUST00000227737 2827 ntBASIC14.8□□□□□ -0.04
Clrn1Q8K445 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clrn1Q8K445 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm8825-201ENSMUST00000182565 998 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm4518-201ENSMUST00000182638 718 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm7506-201ENSMUST00000207758 815 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.79□□□□□ -0.04
Clrn1Q8K445 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Clrn1Q8K445 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Clrn1Q8K445 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms