Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Brf1Q8CFK2 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Gm44616-201ENSMUST00000206417 1732 ntBASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Prkcz2-201ENSMUST00000206136 1756 ntBASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Brf1Q8CFK2 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Brf1Q8CFK2 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Brf1Q8CFK2 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Brf1Q8CFK2 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Brf1Q8CFK2 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Brf1Q8CFK2 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.89■□□□□ 0.62
Brf1Q8CFK2 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC18.89■□□□□ 0.61
Brf1Q8CFK2 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Brf1Q8CFK2 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Gm11780-201ENSMUST00000136880 516 ntBASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Gm6296-201ENSMUST00000222599 943 ntBASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Brf1Q8CFK2 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Gm13418-201ENSMUST00000119097 944 ntBASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Gm4535-201ENSMUST00000182274 558 ntBASIC18.87■□□□□ 0.61
Brf1Q8CFK2 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Gm10355-201ENSMUST00000097146 517 ntBASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Brf1Q8CFK2 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms