Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm15165-201ENSMUST00000118140 502 ntBASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm27525-201ENSMUST00000184465 107 ntBASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm27867-201ENSMUST00000184778 125 ntBASIC18.41■□□□□ 0.54
Limch1Q3UH68 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm44454-201ENSMUST00000198541 138 ntBASIC18.41■□□□□ 0.54
Limch1Q3UH68 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm6376-201ENSMUST00000209407 580 ntBASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm6296-201ENSMUST00000222599 943 ntBASIC18.41■□□□□ 0.54
Limch1Q3UH68 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Limch1Q3UH68 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Gm7862-201ENSMUST00000121461 292 ntBASIC18.4■□□□□ 0.54
Limch1Q3UH68 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Limch1Q3UH68 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Limch1Q3UH68 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Limch1Q3UH68 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Limch1Q3UH68 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Limch1Q3UH68 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Limch1Q3UH68 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.39■□□□□ 0.53
Limch1Q3UH68 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC18.39■□□□□ 0.53
Limch1Q3UH68 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC18.39■□□□□ 0.53
Limch1Q3UH68 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Limch1Q3UH68 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Gm13830-205ENSMUST00000201195 1155 ntBASIC18.38■□□□□ 0.53
Limch1Q3UH68 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Limch1Q3UH68 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC18.37■□□□□ 0.53
Limch1Q3UH68 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms