Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.31□□□□□ -0.12
Cdh11P55288 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC14.31□□□□□ -0.12
Cdh11P55288 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
Cdh11P55288 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.31□□□□□ -0.12
Cdh11P55288 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.31□□□□□ -0.12
Cdh11P55288 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Cdh11P55288 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Cdh11P55288 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Cdh11P55288 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.3□□□□□ -0.12
Cdh11P55288 Gm13186-201ENSMUST00000118031 316 ntBASIC14.3□□□□□ -0.12
Cdh11P55288 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Gm27742-201ENSMUST00000184667 60 ntBASIC14.3□□□□□ -0.12
Cdh11P55288 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Cdh11P55288 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.3□□□□□ -0.12
Cdh11P55288 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.3□□□□□ -0.12
Cdh11P55288 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Cdh11P55288 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Cdh11P55288 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.3□□□□□ -0.12
Cdh11P55288 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC14.3□□□□□ -0.12
Cdh11P55288 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Cdh11P55288 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.29□□□□□ -0.12
Cdh11P55288 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.29□□□□□ -0.12
Cdh11P55288 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.29□□□□□ -0.12
Cdh11P55288 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Cdh11P55288 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Cdh11P55288 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Cdh11P55288 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms