Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Col3a1P08121 Gm9385-201ENSMUST00000117563 472 ntBASIC18.56■□□□□ 0.56
Col3a1P08121 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC18.56■□□□□ 0.56
Col3a1P08121 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col3a1P08121 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Col3a1P08121 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.55■□□□□ 0.56
Col3a1P08121 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC18.55■□□□□ 0.56
Col3a1P08121 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC18.55■□□□□ 0.56
Col3a1P08121 AC158982.1-201ENSMUST00000228377 901 ntBASIC18.55■□□□□ 0.56
Col3a1P08121 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col3a1P08121 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC18.55■□□□□ 0.56
Col3a1P08121 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col3a1P08121 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Col3a1P08121 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Col3a1P08121 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Gm14701-201ENSMUST00000117156 348 ntBASIC18.54■□□□□ 0.56
Col3a1P08121 Gm13365-201ENSMUST00000121188 973 ntBASIC18.54■□□□□ 0.56
Col3a1P08121 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Col3a1P08121 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC18.54■□□□□ 0.56
Col3a1P08121 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.54■□□□□ 0.56
Col3a1P08121 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC18.54■□□□□ 0.56
Col3a1P08121 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC18.54■□□□□ 0.56
Col3a1P08121 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.54■□□□□ 0.56
Col3a1P08121 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col3a1P08121 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC18.53■□□□□ 0.56
Col3a1P08121 Gm44335-201ENSMUST00000196879 141 ntBASIC18.53■□□□□ 0.56
Col3a1P08121 Gm44297-201ENSMUST00000198304 141 ntBASIC18.53■□□□□ 0.56
Col3a1P08121 Gm44346-201ENSMUST00000198851 141 ntBASIC18.53■□□□□ 0.56
Col3a1P08121 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC18.53■□□□□ 0.56
Col3a1P08121 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 CT009510.1-201ENSMUST00000227972 270 ntBASIC18.53■□□□□ 0.56
Col3a1P08121 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
Col3a1P08121 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC18.53■□□□□ 0.56
Col3a1P08121 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col3a1P08121 Mir6990-201ENSMUST00000183724 91 ntBASIC18.52■□□□□ 0.56
Col3a1P08121 Gpr146-202ENSMUST00000053120 1040 ntBASIC18.52■□□□□ 0.56
Col3a1P08121 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col3a1P08121 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col3a1P08121 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.52■□□□□ 0.56
Col3a1P08121 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
Col3a1P08121 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.52■□□□□ 0.56
Col3a1P08121 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
Col3a1P08121 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.56
Col3a1P08121 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Col3a1P08121 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col3a1P08121 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col3a1P08121 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col3a1P08121 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col3a1P08121 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC18.52■□□□□ 0.55
Col3a1P08121 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Gm5312-201ENSMUST00000203728 547 ntBASIC18.52■□□□□ 0.55
Col3a1P08121 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC18.52■□□□□ 0.55
Col3a1P08121 CT025555.1-201ENSMUST00000225901 1217 ntBASIC18.52■□□□□ 0.55
Col3a1P08121 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.52■□□□□ 0.55
Col3a1P08121 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col3a1P08121 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC18.52■□□□□ 0.55
Col3a1P08121 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Col3a1P08121 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col3a1P08121 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Col3a1P08121 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms