Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Lmx1bO88609 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Lmx1bO88609 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Lmx1bO88609 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lmx1bO88609 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Lmx1bO88609 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm6550-201ENSMUST00000187574 993 ntBASIC14.18□□□□□ -0.14
Lmx1bO88609 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC14.18□□□□□ -0.14
Lmx1bO88609 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
Lmx1bO88609 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.18□□□□□ -0.14
Lmx1bO88609 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.18□□□□□ -0.14
Lmx1bO88609 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Lmx1bO88609 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm4609-201ENSMUST00000106443 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm5138-201ENSMUST00000113842 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm15191-201ENSMUST00000117933 1000 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm12182-201ENSMUST00000118655 1008 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm13882-201ENSMUST00000120886 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm10284-201ENSMUST00000145057 1005 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm10481-201ENSMUST00000179228 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm2574-201ENSMUST00000181051 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm3200-201ENSMUST00000181493 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm8825-201ENSMUST00000182565 998 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm4518-201ENSMUST00000182638 718 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm8330-201ENSMUST00000182754 1008 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm4575-201ENSMUST00000182991 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm8709-201ENSMUST00000183230 1012 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm18622-201ENSMUST00000219361 595 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm10293-201ENSMUST00000076317 1002 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm6316-201ENSMUST00000082064 1020 ntBASIC14.17□□□□□ -0.14
Lmx1bO88609 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.17□□□□□ -0.14
Lmx1bO88609 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Lmx1bO88609 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lmx1bO88609 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lmx1bO88609 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lmx1bO88609 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC14.16□□□□□ -0.14
Lmx1bO88609 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lmx1bO88609 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lmx1bO88609 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Lmx1bO88609 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms