Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trim3Q9R1R2 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Gm17971-201ENSMUST00000190239 806 ntBASIC14.79□□□□□ -0.04
Trim3Q9R1R2 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trim3Q9R1R2 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Gm13312-201ENSMUST00000119631 718 ntBASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trim3Q9R1R2 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trim3Q9R1R2 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trim3Q9R1R2 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Trim3Q9R1R2 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms