Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Ube3bQ9ES34 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Gm11779-201ENSMUST00000118541 368 ntBASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ube3bQ9ES34 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 AC160980.1-201ENSMUST00000224136 970 ntBASIC18.62■□□□□ 0.57
Ube3bQ9ES34 AC131709.1-201ENSMUST00000224731 1180 ntBASIC18.62■□□□□ 0.57
Ube3bQ9ES34 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ube3bQ9ES34 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Gm9727-201ENSMUST00000161387 555 ntBASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Ube3bQ9ES34 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 AC131586.3-201ENSMUST00000228355 1367 ntBASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gm27300-201ENSMUST00000184085 97 ntBASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gm27335-201ENSMUST00000184758 97 ntBASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gm7787-201ENSMUST00000216858 688 ntBASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC18.6■□□□□ 0.57
Ube3bQ9ES34 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms