Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Phf7-203ENSMUST00000226565 1971 ntBASIC17.13■□□□□ 0.33
Lig3P97386 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Lig3P97386 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Lig3P97386 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC17.12■□□□□ 0.33
Lig3P97386 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Lig3P97386 Gm12260-201ENSMUST00000122447 411 ntBASIC17.12■□□□□ 0.33
Lig3P97386 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC17.12■□□□□ 0.33
Lig3P97386 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.12■□□□□ 0.33
Lig3P97386 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Lig3P97386 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Lig3P97386 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Lig3P97386 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Lig3P97386 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Gm27000-201ENSMUST00000182943 842 ntBASIC17.11■□□□□ 0.33
Lig3P97386 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Lig3P97386 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Lig3P97386 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lig3P97386 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Lig3P97386 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.1■□□□□ 0.33
Lig3P97386 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Lig3P97386 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Lig3P97386 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.1■□□□□ 0.33
Lig3P97386 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.1■□□□□ 0.33
Lig3P97386 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC17.1■□□□□ 0.33
Lig3P97386 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17.1■□□□□ 0.33
Lig3P97386 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.1■□□□□ 0.33
Lig3P97386 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Lig3P97386 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lig3P97386 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lig3P97386 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms