Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chmp6P0C0A3 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chmp6P0C0A3 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Gm24589-201ENSMUST00000116692 94 ntBASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Gm12644-201ENSMUST00000119935 606 ntBASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chmp6P0C0A3 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chmp6P0C0A3 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chmp6P0C0A3 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chmp6P0C0A3 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Chmp6P0C0A3 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chmp6P0C0A3 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chmp6P0C0A3 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms