Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC18.61■□□□□ 0.57
Col3a1P08121 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC18.61■□□□□ 0.57
Col3a1P08121 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC18.61■□□□□ 0.57
Col3a1P08121 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC18.61■□□□□ 0.57
Col3a1P08121 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Col3a1P08121 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC18.61■□□□□ 0.57
Col3a1P08121 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Col3a1P08121 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col3a1P08121 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 AC130669.1-201ENSMUST00000228537 1672 ntBASIC18.61■□□□□ 0.57
Col3a1P08121 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Col3a1P08121 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col3a1P08121 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Gm11025-201ENSMUST00000140773 466 ntBASIC18.6■□□□□ 0.57
Col3a1P08121 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC18.6■□□□□ 0.57
Col3a1P08121 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Gm2272-201ENSMUST00000194903 582 ntBASIC18.6■□□□□ 0.57
Col3a1P08121 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC18.6■□□□□ 0.57
Col3a1P08121 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 AC153526.5-201ENSMUST00000218661 2147 ntBASIC18.6■□□□□ 0.57
Col3a1P08121 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Col3a1P08121 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col3a1P08121 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC18.59■□□□□ 0.57
Col3a1P08121 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC18.59■□□□□ 0.57
Col3a1P08121 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC18.59■□□□□ 0.57
Col3a1P08121 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Col3a1P08121 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 Gm45293-201ENSMUST00000209754 1812 ntBASIC18.59■□□□□ 0.57
Col3a1P08121 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Col3a1P08121 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col3a1P08121 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.58■□□□□ 0.57
Col3a1P08121 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col3a1P08121 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC18.58■□□□□ 0.57
Col3a1P08121 AC159114.1-201ENSMUST00000220349 266 ntBASIC18.58■□□□□ 0.57
Col3a1P08121 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
Col3a1P08121 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Col3a1P08121 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col3a1P08121 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Col3a1P08121 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Col3a1P08121 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col3a1P08121 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col3a1P08121 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.58■□□□□ 0.57
Col3a1P08121 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col3a1P08121 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
Col3a1P08121 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Col3a1P08121 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC18.58■□□□□ 0.56
Col3a1P08121 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC18.58■□□□□ 0.56
Col3a1P08121 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Col3a1P08121 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.58■□□□□ 0.56
Col3a1P08121 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col3a1P08121 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
Col3a1P08121 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Col3a1P08121 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Col3a1P08121 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Gm7556-201ENSMUST00000201178 1084 ntBASIC18.57■□□□□ 0.56
Col3a1P08121 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC18.57■□□□□ 0.56
Col3a1P08121 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col3a1P08121 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms