Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Gm27459-201ENSMUST00000184860 107 ntBASIC19■□□□□ 0.63
Brf1Q8CFK2 Gm43347-201ENSMUST00000200226 580 ntBASIC19■□□□□ 0.63
Brf1Q8CFK2 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Gm18622-201ENSMUST00000219361 595 ntBASIC19■□□□□ 0.63
Brf1Q8CFK2 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC19■□□□□ 0.63
Brf1Q8CFK2 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Brf1Q8CFK2 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Gm8097-201ENSMUST00000117903 829 ntBASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.99■□□□□ 0.63
Brf1Q8CFK2 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Brf1Q8CFK2 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44357-201ENSMUST00000195897 142 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm19658-201ENSMUST00000196231 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44367-201ENSMUST00000196836 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44350-201ENSMUST00000197197 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44390-201ENSMUST00000197533 144 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44313-201ENSMUST00000198018 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44486-201ENSMUST00000198508 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44314-201ENSMUST00000199263 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44394-201ENSMUST00000199558 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44484-201ENSMUST00000199873 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44466-201ENSMUST00000200264 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm44359-201ENSMUST00000200671 138 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm13830-205ENSMUST00000201195 1155 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm8655-201ENSMUST00000221159 852 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Brf1Q8CFK2 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Brf1Q8CFK2 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms