Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Limch1Q3UH68 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Rps4l-201ENSMUST00000071745 943 ntBASIC18.5■□□□□ 0.55
Limch1Q3UH68 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Limch1Q3UH68 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Gm9449-201ENSMUST00000207265 1011 ntBASIC18.49■□□□□ 0.55
Limch1Q3UH68 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Limch1Q3UH68 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Limch1Q3UH68 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Limch1Q3UH68 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms