Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Gm27989-201ENSMUST00000184721 107 ntBASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Gm17837-201ENSMUST00000186435 985 ntBASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Ddb1Q3U1J4 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Gm6415-201ENSMUST00000118488 348 ntBASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Gm38294-201ENSMUST00000192831 381 ntBASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 AC166341.4-201ENSMUST00000220625 123 ntBASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Ddb1Q3U1J4 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Gtpbp10-211ENSMUST00000198799 648 ntBASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ddb1Q3U1J4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Gm6973-201ENSMUST00000117080 721 ntBASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Ddb1Q3U1J4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Haglr-201ENSMUST00000100000 2085 ntBASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Gm14127-201ENSMUST00000117906 678 ntBASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Mir7684-201ENSMUST00000183858 60 ntBASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Ddb1Q3U1J4 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms