Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.04■□□□□ 0.32
RaraP11416 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RaraP11416 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RaraP11416 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RaraP11416 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
RaraP11416 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RaraP11416 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RaraP11416 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.03■□□□□ 0.32
RaraP11416 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
RaraP11416 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
RaraP11416 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
RaraP11416 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
RaraP11416 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RaraP11416 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RaraP11416 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
RaraP11416 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.02■□□□□ 0.32
RaraP11416 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RaraP11416 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.02■□□□□ 0.32
RaraP11416 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RaraP11416 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
RaraP11416 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
RaraP11416 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
RaraP11416 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RaraP11416 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.02■□□□□ 0.31
RaraP11416 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
RaraP11416 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RaraP11416 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RaraP11416 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
RaraP11416 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
RaraP11416 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.01■□□□□ 0.31
RaraP11416 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.01■□□□□ 0.31
RaraP11416 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
RaraP11416 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RaraP11416 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17■□□□□ 0.31
RaraP11416 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RaraP11416 Gm15794-201ENSMUST00000120182 631 ntBASIC17■□□□□ 0.31
RaraP11416 Gm11950-201ENSMUST00000121615 838 ntBASIC17■□□□□ 0.31
RaraP11416 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms