Protein–RNA interactions for Protein: Q9QUM7

Msh5, MutS protein homolog 5, mousemouse

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh5Q9QUM7 Gm32996-201ENSMUST00000199828 1447 ntBASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm8258-201ENSMUST00000055593 1449 ntBASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm5797-201ENSMUST00000100886 997 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm3149-201ENSMUST00000112779 997 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm15879-202ENSMUST00000150906 565 ntTSL 2 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm8362-202ENSMUST00000170673 997 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm6728-201ENSMUST00000178117 1065 ntBASIC16.2■□□□□ 0.18
Msh5Q9QUM7 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Msh5Q9QUM7 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Gm9013-201ENSMUST00000132939 882 ntBASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 AC132881.2-201ENSMUST00000225474 709 ntBASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Oosp3-201ENSMUST00000069760 807 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Msh5Q9QUM7 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 AA414768-201ENSMUST00000121924 1257 ntBASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Gm11860-201ENSMUST00000122346 1010 ntBASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Gm5587-201ENSMUST00000206270 674 ntBASIC16.18■□□□□ 0.18
Msh5Q9QUM7 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 App-207ENSMUST00000227737 2827 ntBASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Msh5Q9QUM7 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Mir770-201ENSMUST00000103252 94 ntBASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Gm15875-201ENSMUST00000152264 273 ntTSL 3 BASIC16.17■□□□□ 0.18
Msh5Q9QUM7 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms