Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Gm5320-201ENSMUST00000207163 1519 ntBASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Gm12329-201ENSMUST00000120829 1007 ntBASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Upf1Q9EPU0 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Gm18624-201ENSMUST00000220966 658 ntBASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf1Q9EPU0 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 CT009713.10-202ENSMUST00000225734 696 ntBASIC17.77■□□□□ 0.44
Upf1Q9EPU0 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Gm10478-201ENSMUST00000084451 396 ntBASIC17.77■□□□□ 0.44
Upf1Q9EPU0 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Upf1Q9EPU0 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf1Q9EPU0 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf1Q9EPU0 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf1Q9EPU0 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf1Q9EPU0 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 AC130669.1-201ENSMUST00000228537 1672 ntBASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Gm4875-201ENSMUST00000118257 786 ntBASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Trav4d-2-201ENSMUST00000120914 335 ntBASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Upf1Q9EPU0 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms