Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Ddx55Q6ZPL9 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm22065-201ENSMUST00000103753 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm22066-201ENSMUST00000103761 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24932-201ENSMUST00000103763 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24115-201ENSMUST00000103799 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm22190-201ENSMUST00000103827 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm22191-201ENSMUST00000103831 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24721-201ENSMUST00000103849 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm28018-201ENSMUST00000103869 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm26399-201ENSMUST00000103937 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm25349-201ENSMUST00000177728 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm23616-201ENSMUST00000177797 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm25871-201ENSMUST00000177816 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24752-201ENSMUST00000178240 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24496-201ENSMUST00000178287 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm25649-201ENSMUST00000178476 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm25548-201ENSMUST00000178681 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm23147-201ENSMUST00000178841 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm26095-201ENSMUST00000179270 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm22171-201ENSMUST00000179283 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm23936-201ENSMUST00000179354 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm22619-201ENSMUST00000179516 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm25255-201ENSMUST00000179579 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24755-201ENSMUST00000179691 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm26506-201ENSMUST00000179692 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm25086-201ENSMUST00000179931 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm23243-201ENSMUST00000180047 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24659-201ENSMUST00000180212 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm24169-201ENSMUST00000180244 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm23689-201ENSMUST00000180354 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm27359-201ENSMUST00000184153 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm27785-201ENSMUST00000184268 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm27466-201ENSMUST00000184396 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm27703-201ENSMUST00000184836 110 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.88■□□□□ 0.45
Ddx55Q6ZPL9 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Ddx55Q6ZPL9 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC17.86■□□□□ 0.45
Ddx55Q6ZPL9 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms