Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.56■□□□□ 0.24
Upf3aQ3ULJ3 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Gm27494-201ENSMUST00000184735 189 ntBASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Upf3aQ3ULJ3 Wnt10b-206ENSMUST00000228546 2709 ntBASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Mir1895-201ENSMUST00000122615 79 ntBASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Gm45747-201ENSMUST00000212203 999 ntBASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Gm43294-201ENSMUST00000202850 2490 ntBASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Upf3aQ3ULJ3 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Gm13216-201ENSMUST00000117145 591 ntBASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Gm5177-201ENSMUST00000183092 997 ntBASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Upf3aQ3ULJ3 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 AC115863.1-201ENSMUST00000214815 1813 ntBASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Gm15427-201ENSMUST00000117288 531 ntBASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Upf3aQ3ULJ3 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Upf3aQ3ULJ3 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms