Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ddb1Q3U1J4 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Gm15693-201ENSMUST00000120470 637 ntBASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Gm27618-201ENSMUST00000183671 60 ntBASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Gm27306-201ENSMUST00000183970 107 ntBASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Gm2423-201ENSMUST00000074863 733 ntBASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.97■□□□□ 0.79
Ddb1Q3U1J4 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Gm10154-201ENSMUST00000084445 354 ntBASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ddb1Q3U1J4 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Gm36858-201ENSMUST00000194501 2391 ntBASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC19.95■□□□□ 0.78
Ddb1Q3U1J4 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Gm7286-201ENSMUST00000182691 1007 ntBASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Mir8102-201ENSMUST00000184148 139 ntBASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddb1Q3U1J4 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 AC025913.2-201ENSMUST00000220136 1766 ntBASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Ddb1Q3U1J4 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms