Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.29□□□□□ -0.12
Rfx3P48381 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.29□□□□□ -0.12
Rfx3P48381 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx3P48381 Gm10231-201ENSMUST00000181584 441 ntBASIC14.29□□□□□ -0.12
Rfx3P48381 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Gm10175-202ENSMUST00000208752 441 ntBASIC14.29□□□□□ -0.12
Rfx3P48381 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx3P48381 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Rfx3P48381 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC14.29□□□□□ -0.12
Rfx3P48381 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.29□□□□□ -0.12
Rfx3P48381 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC14.29□□□□□ -0.12
Rfx3P48381 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Rfx3P48381 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.28□□□□□ -0.12
Rfx3P48381 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Rfx3P48381 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Rfx3P48381 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Rfx3P48381 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx3P48381 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC14.27□□□□□ -0.12
Rfx3P48381 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.27□□□□□ -0.12
Rfx3P48381 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.27□□□□□ -0.12
Rfx3P48381 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Rfx3P48381 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Rfx3P48381 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Rfx3P48381 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.27□□□□□ -0.12
Rfx3P48381 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx3P48381 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Rfx3P48381 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Rfx3P48381 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.27□□□□□ -0.13
Rfx3P48381 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Rfx3P48381 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Rfx3P48381 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Rfx3P48381 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx3P48381 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rfx3P48381 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rfx3P48381 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC14.26□□□□□ -0.13
Rfx3P48381 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Rfx3P48381 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Rfx3P48381 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Rfx3P48381 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx3P48381 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC14.26□□□□□ -0.13
Rfx3P48381 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC14.26□□□□□ -0.13
Rfx3P48381 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms