Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Rfx1P48377 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Rfx1P48377 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Rfx1P48377 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
Rfx1P48377 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC18.89■□□□□ 0.61
Rfx1P48377 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.89■□□□□ 0.61
Rfx1P48377 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Rfx1P48377 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx1P48377 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC18.88■□□□□ 0.61
Rfx1P48377 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx1P48377 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC18.88■□□□□ 0.61
Rfx1P48377 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Rfx1P48377 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC18.87■□□□□ 0.61
Rfx1P48377 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Gm37305-201ENSMUST00000195714 4279 ntBASIC18.87■□□□□ 0.61
Rfx1P48377 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Gm16061-201ENSMUST00000122167 857 ntBASIC18.87■□□□□ 0.61
Rfx1P48377 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Rfx1P48377 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.87■□□□□ 0.61
Rfx1P48377 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.87■□□□□ 0.61
Rfx1P48377 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx1P48377 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Gm10676-201ENSMUST00000098778 3221 ntBASIC18.86■□□□□ 0.61
Rfx1P48377 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Rfx1P48377 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.86■□□□□ 0.61
Rfx1P48377 Gm13474-201ENSMUST00000122466 815 ntBASIC18.86■□□□□ 0.61
Rfx1P48377 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.86■□□□□ 0.61
Rfx1P48377 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Rfx1P48377 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC18.86■□□□□ 0.61
Rfx1P48377 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
Rfx1P48377 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx1P48377 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.85■□□□□ 0.61
Rfx1P48377 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Rfx1P48377 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Rfx1P48377 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.85■□□□□ 0.61
Rfx1P48377 Gm30025-201ENSMUST00000218555 728 ntBASIC18.85■□□□□ 0.61
Rfx1P48377 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Rfx1P48377 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx1P48377 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Rfx1P48377 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Rfx1P48377 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Rfx1P48377 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms