Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Atg4aQ8C9S8 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Atg4aQ8C9S8 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Atg4aQ8C9S8 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Atg4aQ8C9S8 Prkcz2-201ENSMUST00000206136 1756 ntBASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Birc2-201ENSMUST00000054878 378 ntBASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Atg4aQ8C9S8 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.66
Atg4aQ8C9S8 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Atg4aQ8C9S8 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Gm17971-201ENSMUST00000190239 806 ntBASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.19■□□□□ 0.66
Atg4aQ8C9S8 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm8097-201ENSMUST00000117903 829 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44357-201ENSMUST00000195897 142 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm19658-201ENSMUST00000196231 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44367-201ENSMUST00000196836 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44350-201ENSMUST00000197197 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44390-201ENSMUST00000197533 144 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44313-201ENSMUST00000198018 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44486-201ENSMUST00000198508 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44314-201ENSMUST00000199263 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44394-201ENSMUST00000199558 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44484-201ENSMUST00000199873 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44466-201ENSMUST00000200264 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gm44359-201ENSMUST00000200671 138 ntBASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Atg4aQ8C9S8 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Atg4aQ8C9S8 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Atg4aQ8C9S8 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms