Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Nr1h4Q60641 App-207ENSMUST00000227737 2827 ntBASIC15.09■□□□□ 0.01
Nr1h4Q60641 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
Nr1h4Q60641 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nr1h4Q60641 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.08■□□□□ 0.01
Nr1h4Q60641 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nr1h4Q60641 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC15.08■□□□□ 0
Nr1h4Q60641 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.08■□□□□ 0
Nr1h4Q60641 Mir1668-201ENSMUST00000184114 107 ntBASIC15.08■□□□□ 0
Nr1h4Q60641 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.08■□□□□ 0
Nr1h4Q60641 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Gm10566-201ENSMUST00000086739 996 ntBASIC15.08■□□□□ 0
Nr1h4Q60641 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Nr1h4Q60641 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Nr1h4Q60641 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1h4Q60641 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Gm30025-201ENSMUST00000218555 728 ntBASIC15.07■□□□□ 0
Nr1h4Q60641 Gm5417-201ENSMUST00000079706 384 ntBASIC15.07■□□□□ 0
Nr1h4Q60641 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nr1h4Q60641 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1h4Q60641 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC15.06■□□□□ 0
Nr1h4Q60641 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC15.06■□□□□ 0
Nr1h4Q60641 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
Nr1h4Q60641 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
Nr1h4Q60641 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Nr1h4Q60641 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC15.06■□□□□ 0
Nr1h4Q60641 Gm26039-201ENSMUST00000158152 144 ntBASIC15.06■□□□□ 0
Nr1h4Q60641 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
Nr1h4Q60641 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC15.06■□□□□ 0
Nr1h4Q60641 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.06■□□□□ 0
Nr1h4Q60641 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC15.06■□□□□ 0
Nr1h4Q60641 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms