Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Gm36967-201ENSMUST00000193814 266 ntBASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Gm45133-201ENSMUST00000207548 2773 ntBASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim40Q3UWA4 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Timm23-208ENSMUST00000226683 750 ntBASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Gm16425-201ENSMUST00000118143 3130 ntBASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim40Q3UWA4 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Mir1199-201ENSMUST00000117015 119 ntBASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Gm13186-201ENSMUST00000118031 316 ntBASIC14.86□□□□□ -0.03
Trim40Q3UWA4 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 AC175538.1-201ENSMUST00000225343 1269 ntBASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim40Q3UWA4 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim40Q3UWA4 Gm16042-201ENSMUST00000204813 1247 ntBASIC14.85□□□□□ -0.03
Trim40Q3UWA4 CT025689.6-201ENSMUST00000224991 1104 ntBASIC14.85□□□□□ -0.03
Trim40Q3UWA4 AC154649.1-201ENSMUST00000227392 384 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms