Protein–RNA interactions for Protein: P79621

Ciita, MHC class II transactivator, mousemouse

Predictions only

Length 1,155 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CiitaP79621 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.11■□□□□ 0.33
CiitaP79621 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CiitaP79621 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.11■□□□□ 0.33
CiitaP79621 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CiitaP79621 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CiitaP79621 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CiitaP79621 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.1■□□□□ 0.33
CiitaP79621 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.1■□□□□ 0.33
CiitaP79621 Gm5712-201ENSMUST00000199748 1043 ntBASIC17.1■□□□□ 0.33
CiitaP79621 Gm5364-201ENSMUST00000216789 889 ntBASIC17.1■□□□□ 0.33
CiitaP79621 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.1■□□□□ 0.33
CiitaP79621 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CiitaP79621 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
CiitaP79621 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CiitaP79621 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.09■□□□□ 0.33
CiitaP79621 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.09■□□□□ 0.33
CiitaP79621 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC17.09■□□□□ 0.33
CiitaP79621 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC17.09■□□□□ 0.33
CiitaP79621 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC17.09■□□□□ 0.33
CiitaP79621 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.09■□□□□ 0.33
CiitaP79621 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.09■□□□□ 0.33
CiitaP79621 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CiitaP79621 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CiitaP79621 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CiitaP79621 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CiitaP79621 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.08■□□□□ 0.32
CiitaP79621 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CiitaP79621 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.08■□□□□ 0.32
CiitaP79621 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC17.08■□□□□ 0.32
CiitaP79621 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC17.08■□□□□ 0.32
CiitaP79621 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CiitaP79621 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CiitaP79621 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CiitaP79621 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CiitaP79621 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CiitaP79621 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CiitaP79621 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC17.07■□□□□ 0.32
CiitaP79621 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CiitaP79621 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms