Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Hmgb1P63158 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Hmgb1P63158 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC17.4■□□□□ 0.38
Hmgb1P63158 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Hmgb1P63158 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Hmgb1P63158 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Hmgb1P63158 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb1P63158 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Gm6257-201ENSMUST00000163864 910 ntBASIC17.39■□□□□ 0.37
Hmgb1P63158 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb1P63158 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb1P63158 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Hmgb1P63158 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Hmgb1P63158 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.38■□□□□ 0.37
Hmgb1P63158 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Gm25016-201ENSMUST00000158399 131 ntBASIC17.38■□□□□ 0.37
Hmgb1P63158 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Gm45328-201ENSMUST00000210942 917 ntBASIC17.38■□□□□ 0.37
Hmgb1P63158 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Hmgb1P63158 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.38■□□□□ 0.37
Hmgb1P63158 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.37■□□□□ 0.37
Hmgb1P63158 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Hmgb1P63158 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.37■□□□□ 0.37
Hmgb1P63158 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.37■□□□□ 0.37
Hmgb1P63158 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.37■□□□□ 0.37
Hmgb1P63158 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
Hmgb1P63158 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.37■□□□□ 0.37
Hmgb1P63158 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Hmgb1P63158 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Hmgb1P63158 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.36■□□□□ 0.37
Hmgb1P63158 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgb1P63158 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms