Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RaraP11416 Gm6623-201ENSMUST00000173570 544 ntBASIC17.12■□□□□ 0.33
RaraP11416 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RaraP11416 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RaraP11416 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.11■□□□□ 0.33
RaraP11416 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RaraP11416 Gm6345-202ENSMUST00000180900 204 ntBASIC17.11■□□□□ 0.33
RaraP11416 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.11■□□□□ 0.33
RaraP11416 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.11■□□□□ 0.33
RaraP11416 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.11■□□□□ 0.33
RaraP11416 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.11■□□□□ 0.33
RaraP11416 AC114585.2-202ENSMUST00000228094 426 ntBASIC17.11■□□□□ 0.33
RaraP11416 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RaraP11416 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RaraP11416 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.11■□□□□ 0.33
RaraP11416 BC037039-201ENSMUST00000192003 2205 ntBASIC17.11■□□□□ 0.33
RaraP11416 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Gm9013-201ENSMUST00000132939 882 ntBASIC17.1■□□□□ 0.33
RaraP11416 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RaraP11416 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.1■□□□□ 0.33
RaraP11416 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RaraP11416 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RaraP11416 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.09■□□□□ 0.33
RaraP11416 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
RaraP11416 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RaraP11416 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
RaraP11416 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.09■□□□□ 0.33
RaraP11416 Gm10231-201ENSMUST00000181584 441 ntBASIC17.09■□□□□ 0.33
RaraP11416 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Gm10175-202ENSMUST00000208752 441 ntBASIC17.09■□□□□ 0.33
RaraP11416 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.09■□□□□ 0.33
RaraP11416 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.09■□□□□ 0.33
RaraP11416 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RaraP11416 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
RaraP11416 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
RaraP11416 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms